• J. Y. Fan

      Articles written in Journal of Genetics

    • Transcriptome atlas of eight liver cell types uncovers effects of histidine catabolites on rat liver regeneration

      C. F. Chang J. Y. Fan F. C. Zhang J. Ma C. S. Xu

      More Details Abstract Fulltext PDF

      Eight liver cell types were isolated using the methods of Percoll density gradient centrifugation and immunomagnetic beads to explore effects of histidine catabolites on rat liver regeneration. Rat Genome 230 2.0 Array was used to detect the expression profiles of genes associated with metabolism of histidine and its catabolites for the above-mentioned eight liver cell types, and bioinformatic and systems biology approaches were employed to analyse the relationship between above genes and rat liver regeneration. The results showed that the urocanic acid (UA) was degraded from histidine in Kupffer cells, acts on Kupffer cells itself and dendritic cells to generate immune suppression by autocrine and paracrine modes. Hepatocytes, biliary epithelia cells, oval cells and dendritic cells can convert histidine to histamine, which can promote sinusoidal endothelial cells proliferation by GsM pathway, and promote the proliferation of hepatocytes and biliary epithelia cells by GqM pathway.

    • Eight paths of ERK1/2 signalling pathway regulating hepatocyte proliferation in rat liver regeneration

      J. W. Li G. P. Wang J. Y. Fan C. F. Chang C. S. Xu

      More Details Abstract Fulltext PDF

      Although it is known that hormones, growth factors and integrin promote hepatocyte proliferation in liver regeneration (LR) through ERK1/2 signalling pathway, reports about regulating processes of its intracellular paths in hepatocytes of LR are limited. This study aims at exploring which paths of ERK1/2 signalling pathway participate in the regulation of rat LR, especially in hepatocyte proliferation, and how they do so. In all, 14 paths and 165 genes are known to be involved in ERK1/2 signalling pathway. Of them, 161 genes are included in Rat Genome 230 2.0 Array. This array was used to detect expression changes of genes related to ERK1/2 signalling pathway in isolated hepatocytes of rat LR, showing that 60 genes were related to hepatocytes of LR. In addition, bioinformatics and systems biology methods were used to analyse the roles of 14 above paths in regenerating hepatocytes. We found that three paths, RTK → SHC → GRB2/SOS → RAS → RAF, Integrin 𝛽 → FAK → RAC → PAK → RAF and G 𝛽 𝛾 → PI3K 𝛽 𝛾 → RAC → PAK → RAF, promoted the G1 phase progression of hepatocytes by activating ERK1/2. A further four paths, Gq → PLC 𝛽 → PKC → SRC/PYK2 → GRB2/SOS → RAS → RAF, RTK → PLC 𝛾 → PKC → SRC/PYK2 → GRB2/SOS → RAS → RAF, Integrin 𝛽 → FAK/SRC → GRB2/SOS → RAS → RAF and Integrin 𝛽→ FAK → RAC → PAK → RAF, advanced the cell progression of S phase and G2/M checkpoint by activating ERK1/2, and so did PP1/2 → Mek1/2 by decreasing the negative influence on ERK1/2. At the late phase of LR, G𝛼s → AC → EPAC → Rap1 → Raf blocked hepatocyte proliferation by decreasing the activity of ERK1/2 and so did PP1/2 → Mek1/2. In summary, 60 genes and 8 paths of ERK1/2 signalling pathway regulated hepatocyte proliferation in rat LR.

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