The Wajrakarur kimberlite Pipe 6 in Eastern Dharwar Craton, is hardly explored using latest ground-based geophysical techniques. The present study uses the Very Low Frequency Electromagnetic (VLF-EM) method for understanding the aerial extension, depth and geometry of the kimberlite pipe. The VLF-EM data have been analyzed using Fraser filtering of in-phase component, 3D Euler deconvolution of Fraser filtered in-phase data, radially average power spectrum (RAPS) of VLF data (raw data) and 2D inversion of VLF data (raw data). The Fraser filtered in-phase grid anomaly map has witnessed as an effective tool for mapping extension of the kimberlite pipe. The maxima of Fraser filtered in-phase component has been observed as a key parameter to delineate the conducting bodies.The high apparent current density in Karous–Hjelt (K–H) pseudo section locate relatively conducting body possibly associated with kimberlite pipe. Two depth interfaces at about 15 and 32 m have been delineated using RAPS. 3D Euler solution indicate dyke-like structure associated with kimberlite pipe having depth solutions ranging from 6 to 40 m with mode of depth 17 m in the study area. 2D resistivity sections indicate that causative bodies are in the depth range of 15–50 m. The results of VLF-EM study are well validated using geological borehole data over the study area reported by Geological Survey of India.