Some chemical and biological parameters were analysed at sixteen stations in the mangrove ecosystem, of the neighbouring Gautami-Godavari (GG) river estuary and Kakinada (KKD) bay to understand the present status of water quality and the impact of external terrigenous inputs during southwest (SW) monsoon in the study areas. High concentrations of nutrients in the mangrove ecosystem compared to the bay and estuarine ecosystems reveal the importance of this zone as a source of nutrients to the adjacent coastal ecosystems. Low Si:N:P (29:4:1) ratios in these ecosystems are due to the enrichment of these nutrients through external anthropogenic inputs even after the utilization by phytoplankton in the biological cycle. The mean Chl b/Chla and Chl c/Chla ratios and high phaeopigments (Pp) concentrations compared to Chlb and high ratios of Chl a/Pp suggests the possibility of the potential growth of phytoplankton populations in lower light intensity and low turbulent areas of these mangrove ecosystems.