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Volume 19
Issue 5
December 1994
pp 529-536
Nondegradative pisatin-resistance inDictyostelium discoideum, Neurospora crassa andNectria haematococca: Similarities and differences
Durgadas P Kasbekar
Paradoxically, on pisatin-medium (150 μg/ml) the cellular slime mouldDictyostelium discoideum grows only when plated as spores but not when plated as amoebae. The recent discovery of inducible nondegradativc pisatin resistance in amoebae has allowed us to formulate a model that resolves this paradox. In this model, the germinating amoeba is postulated to acquire a pisatin-resistance phenotype while ensconced within the spore wall. This article reviews the findings on which this model is based and extends it to also account for the differences in pisatin sensitivity phenotype that result from sterol alteration in cellular slime moulds and fungi.
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Volume 24
Issue 3
September 1999
pp 401-408
Review
Ascribing functions to the lamin B receptor
Durgadas P Kasbekar
This article reviews the research on the inner nuclear membrane protein lamin B receptor (LBR). It focuses on the biochemical and immunological evidence for an LBR; the cloning of chicken, rat and human LBR cDNAs and genomic sequences; the lamin B-, chromatin-, DNA- and NLS-binding properties of the N-terminal domain and its phosphorylation by different kinases; the sterol C-14 reductase activity of the C-terminal domain; the use of yeast two-hybrid screens and co-immunoprecipitation to identify interacting proteins; and the probing of nuclear assembly and disassembly in living cells with LBR-GFP fusion proteins. The article concludes by considering a scenario whereby LBR levels might even regulate gene expression.
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Volume 24
Issue 4
December 1999
pp 413-415
Commentary
ATad of dexterity: Did the Neurospora transposon use chromosome rearrangements to evade repeat-induced point mutation in Adiopodoume?
Durgadas P Kasbekar
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Volume 27
Issue 2
March 2002
pp 105-112
Genes encoding chimeras ofNeurospora crassa erg-3 and human TM7SF2 proteins fail to complement Neurospora and yeast sterol C-14 reductase mutants
A Prakash Durgadas P Kasbekar
The human gene TM7SF2 encodes a polypeptide (SR-1) with high sequence similarity to sterol C-14 reductase, a key sterol biosynthetic enzyme in fungi, plants and mammals. In Neurospora and yeast this enzyme is encoded by theerg-3 anderg24 genes respectively. In an effort to demonstrate sterol C-14 reductase activity for SR-1 we constructed six recombinant genes coding for chimeras of the Neurosporaerg-3 and SR-1 protein sequences and tested them for complementation of the Neurosporaerg-3 mutant. To our surprise, all the chimeras failed to complementerg-3. A few of the chimeric proteins were also tested against the yeasterg24 mutant, but again there was no complementation. We discuss some reasons that might account for these unexpected findings
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Volume 27
Issue 7
December 2002
pp 633-635
Commentary
Sex and the single gene: Meiotic silencing by unpaired DNA
Durgadas P Kasbekar
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Volume 28
Issue 4
June 2003
pp 361-362
Clipboard
Blueprint of a red mould: Unusual and unexpected findings in the Neurospora genome sequence
Durgadas P Kasbekar
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Volume 28
Issue 6
December 2003
pp 647-650
Clipboard
Het up mould unleashes a sporekiller prion
Durgadas P Kasbekar
het-s/het-S incompatibility is one of only a handful of fungal heterokaryon incompatibility systems that have begun to be molecularly analysed (for a review see Saupe 2000). The spore killer phenotype also is one of only a few segregation ratio distortions that has been studied in any detail. Finally the [HET-s] prion is one of only three examples known in non-mammalian systems (for a review see Wickneret al 1999). Clearly thehet-s/het-S story intersects with several exciting areas of research that offer many opportunities for young scientists.
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Volume 29
Issue 4
December 2004
pp 367-368
Clipboard
Benign anomaly to malign dysplasia: Variable expression of lamin B receptor mutations in humans
Durgadas P Kasbekar
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Volume 30
Issue 1
February 2005
pp 15-20
Collateral damage: Spread of repeat-induced point mutation from a duplicated DNA sequence into an adjoining single-copy gene inNeurospora crassa
Meenal Vyas Durgadas P Kasbekar
Repeat-induced point mutation (RIP) is an unusual genome defense mechanism that was discovered inNeurospora crassa. RIP occurs during a sexual cross and induces numerous G : C to A : T mutations in duplicated DNA sequences and also methylates many of the remaining cytosine residues. We measured the susceptibility of theerg-3 gene, present in single copy, to the spread of RIP from duplications of adjoining sequences. Genomic segments of defined length (1, 1.5 or 2 kb) and located at defined distances (0, 0.5, 1 or 2 kb) upstream or downstream of theerg-3 open reading frame (ORF) were amplified by polymerase chain reaction (PCR), and the duplications were created by transformation of the amplified DNA. Crosses were made with the duplication strains and the frequency oferg-3 mutant progeny provided a measure of the spread of RIP from the duplicated segments into theerg-3 gene. Our results suggest that ordinarily RIP-spread does not occur. However, occasionally the mechanism that confines RIP to the duplicated segment seems to fail (frequency 0.1–0.8%) and then RIP can spread across as much as 1 kb of unduplicated DNA. Additionally, the bacterialhph gene appeared to be very susceptible to the spread of RIP-associated cytosine methylation.
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Volume 31
Issue 1
March 2006
pp 3-4
Commentary
Magic with moulds: Meiotic and mitotic crossing over in Neurospora inversions and duplications
Durgadas P Kasbekar
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Volume 31
Issue 5
December 2006
pp 557-564
Translesion DNA polymerases Pol ζ, Pol η, Pol ι, Pol κ and Rev1 are not essential for repeat-induced point mutation inNeurospora crassa
Ranjan Tamuli C Ravindran Durgadas P Kasbekar
Pol ζ, Pol η, Pol ι, Pol κ and Rev1 are specialized DNA polymerases that are able to synthesize DNA across a damaged template. DNA synthesis by such translesion polymerases can be mutagenic due to the miscoding nature of most damaged nucleotides. In fact, many mutational and hypermutational processes in systems ranging from yeast to mammals have been traced to the activity of such polymerases. We show however, that the translesion polymerases are dispensable for repeat-induced point mutation (RIP) inNeurospora crassa. Additionally, we demonstrate that theupr-1 gene, which encodes the catalytic subunit of Pol ζ, is a highly polymorphic locus in Neurospora.
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Volume 32
Issue 2
March 2007
pp 191-195
Commentary: Successful beyond expectation: David Perkins's research with chromosome rearrangements in Neurospora
Durgadas P Kasbekar
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Volume 35
Issue 1
March 2010
pp 1-1
Editorial: On succeeding to success
Durgadas P Kasbekar
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Volume 35
Issue 4
December 2010
pp 539-546
Articles
Translocations used to generate chromosome segment duplications in Neurospora can disrupt genes and create novel open reading frames
Parmit K Singh Srividhya V Iyer T Naga Sowjanya B Kranthi Raj Durgadas P Kasbekar
In Neurospora crassa, crosses between normal sequence strains and strains bearing some translocations can yield progeny bearing a duplication (Dp) of the translocated chromosome segment. Here, 30 breakpoint junction sequences of 12 Dp-generating translocations were determined. The breakpoints disrupted 13 genes (including predicted genes), and created 10 novel open reading frames. Insertion of sequences from LG III into LG I as translocation T(UK818) disrupts the eat-3 gene, which is the ortholog of the Podospora anserine gene ami1. Since ami1-homozygous Podospora crosses were reported to increase the frequency of repeat-induced point mutation (RIP), we performed crosses homozygous for a deficiency in eat-3 to test for a corresponding increase in RIP frequency. However, our results suggested that, unlike in Podospora, the eat-3 gene might be essential for ascus development in Neurospora. Duplication–heterozygous crosses are generally barren in Neurospora; however, by using molecular probes developed in this study, we could identify Dp segregants from two different translocation–heterozygous crosses, and using these we found that the barren phenotype of at least some duplication–heterozygous crosses was incompletely penetrant.
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Volume 36
Issue 1
March 2011
pp 1-1
Editorial: Coincidences: A tale of two genes, ami-1 and upr-1
Durgadas P Kasbekar
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Volume 36
Issue 5
December 2011
pp 817-821
Articles
A factor in a wild isolated Neurospora crassa strain enables a chromosome segment duplication to suppress repeat-induced point mutation
Mukund Ramakrishnan T Naga Sowjanya Kranthi B Raj Durgadas P Kasbekar
Repeat-induced point mutation (RIP) is a sexual stage-specific mutational process of Neurospora crassa and other fungi that alters duplicated DNA sequences. Previous studies from our laboratory showed that chromosome segment duplications (Dps) longer than ∼300 kbp can dominantly suppress RIP, presumably by titration of the RIP machinery, and that although Dps < 200 kbp did not individually suppress RIP, they could do so in homozygous and multiply heterozygous crosses, provided the sum of the duplicated DNA exceeds ∼300 kbp. Here we demonstrate suppression of RIP in a subset of progeny carrying the normally sub-threshold 154 kbp Dp(R2394) from a cross of T(R2394) to the wild isolated Carrefour Mme. Gras strain (CMG). Thus, the CMG strain contains a factor that together with Dp(R2394) produces a synthetic RIP suppressor phenotype. It is possible that the factor is a cryptic Dp that together with Dp(R2394) can exceed the size threshold for titration of the RIP machinery and thereby causes RIP suppression.
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Volume 37
Issue 1
March 2012
pp 1-1
Editorial: Rare Disease Day, our Roma cousins and the power of one
Durgadas P Kasbekar
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Volume 37
Issue 2
June 2012
pp 199-201
Clipboard: Lymphohematopoietic licence: Sterol C-14 reductase activity of lamin B receptor (Lbr) is essential for neutrophil differentiation
Durgadas P Kasbekar
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Volume 37
Issue 4
September 2012
pp 579-579
Editorial: Green-carding the referee, and Haldane's spell
Durgadas P Kasbekar
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Volume 37
Issue 6
December 2012
pp 933-936
Sidelights: The Sad paradox: Mutations with dominant and recessive phenotypes
Durgadas P Kasbekar
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Volume 38
Issue 1
March 2013
pp 1-1
Editorial: Myth versus mutant: Story of o
Durgadas P Kasbekar
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Volume 39
Issue 1
March 2014
pp 1-1
Editorial: Lesser models
Durgadas P Kasbekar
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Volume 40
Issue 1
March 2015
pp 1-1
Editorial: Via media
Durgadas P Kasbekar
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Volume 41
Issue 1
March 2016
pp 1-1
Editorial
Long-drawn-out story
Durgadas P Kasbekar