pp 807-807 August 2007 Special Issue - Bioinformatics: From Molecules to Systems

Foreword

Alok Bhattacharya

pp 809-825 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Theoretical analysis of noncanonical base pairing interactions in RNA molecules

Dhananjay Bhattacharyya Siv Chand Koripella Abhijit Mitra Vijay Babu Rajendran Bhabdyuti Sinha

pp 827-839 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Mechanism of DNA–binding loss upon single-point mutation in p53

Jon D Wright Carmay Lim

pp 841-850 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Incorporating evolution of transcription factor binding sites into annotated alignments

Abha S Bais Steffen Grossmann Martin Vingron

pp 851-862 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability

Vetriselvi Rangannan Manju Bansal

pp 863-870 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Parsing regulatory DNA: General tasks, techniques, and the PhyloGibbs approach

Rahul Siddharthan

pp 871-881 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Evolutionary insights from suffix array-based genome sequence analysis

Anindya Poddar Nagasuma Chandra Madhavi Ganapathiraju K Sekar Judith Klein-Seetharaman Raj Reddy N Balakrishnan

pp 883-889 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

A method for computing the inter-residue interaction potentials for reduced amino acid alphabet

Abhinav Luthra Anupam Nath Jha G K Ananthasuresh Saraswathi Vishveswara

pp 891-898 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Protein mechanics: a route from structure to function

Richard Lavery Sophie Sacquin-Mora

pp 899-908 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Protein local conformations arise from a mixture of Gaussian distributions

Ashish V Tendulkar Babatunde Ogunnaike Pramod P Wangikar

pp 909-920 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Exploring conformational space using a mean field technique with MOLS sampling

P Arun Prasad V Kanagasabai J Arunachalam N Gautham

pp 921-928 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Analysis on sliding helices and strands in protein structural comparisons: A case study with protein kinases

V S Gowri K Anamika S Gore N Srinivasan

pp 929-936 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Use of secondary structural information and C𝛼-C𝛼 distance restraints to model protein structures with MODELLER

Boojala V B Reddy Yiannis N Kaznessis

pp 937-945 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

ARC: Automated Resource Classifier for agglomerative functional classification of prokaryotic proteins using annotation texts

Muthiah Gnanamani Naveen Kumar Srinivasan Ramachandran

pp 947-963 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Synonymous codon usage in different protein secondary structural classes of human genes: Implication for increased non-randomness of GC₃ rich genes towards protein stability

Pamela Mukhopadhyay Surajit Basak Tapash Chandra Ghosh

pp 965-977 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Cytoview: Development of a cell modelling framework

Prashant Khodade Samta Malhotra Nirmal Kumar M Sriram Iyengar N Balakrishnan Nagasuma Chandra

pp 979-990 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Sub classification and targeted characterization of prophage-encoded two-component cell lysis cassette

K V Srividhya S Krishnaswamy

pp 991-997 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

The p53-MDM2 network: from oscillations to apoptosis

Indrani Bose Bhaswar Ghosh

pp 999-1004 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Type 2 diabetes mellitus: phylogenetic motifs for predicting protein functional sites

Ashok Sharma Tanuja Rastogi Meenakshi Bhartiya A K Shasany S P S Khanuja

pp 1005-1008 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

The next step in biology: A periodic table?

Pawan K Dhar

pp 1009-1017 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Modularized study of human calcium signalling pathway

Losiana Nayak Rajat K De

pp 1019-1025 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Gene ordering in partitive clustering using microarray expressions

Shubhra Sankar Ray Sanghamitra Bandyopadhyay Sankar K Pal

pp 1027-1039 August 2007 Articles Special Issue - Bioinformatics: From Molecules to Systems

Analysis of breast cancer progression using principal component analysis and clustering

G Alexe G S Dalgin S Ganesan C DeLisi G Bhanot