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GeneScan; BLAST; genome annotation; DNA sequence; computational genomics; Fourier analysis

Genomic sequence data are often available well before the annotated sequence is published. We present a method for analysis of genomic DNA to identify coding sequences using the GeneScan algorithm and characterize these resultant sequences by BLAST. The routines are used to develop a system for automated annotation of genome DNA sequences.

Andrew M. Lynn¹ Chakresh Kumar Jain¹ K. Kosalai¹ Pranjan Barman¹ Nupur Thakur¹ Harish Batra¹ Alok Bhattacharya^{1 2}

1. Bioinformatics Centre, Jawaharlal Nehru University, New Delhi - 110 067, India
2. School of Life Sciences, Jawaharlal Nehru University, New Delhi - 110 067, India

Published

April 2001

Manuscript received

26 February 2001