Contents-August 2007

Special Issue - Bioinformatics: From Molecules to Systems
August 2007

Foreword
Bioinformatics: From molecules to systems Alok Bhattacharya	807
Articles
Theoretical analysis of noncanonical base pairing interactions in RNA molecules Dhananjay Bhattacharyya, Siv Chand Koripella, Abhijit Mitra, Vijay Babu Rajendran and Bhabdyuti Sinha	809-825
Mechanism of DNA–binding loss upon single–point mutation in p53 Jon D Wright and Carmay Lim	827-839
Incorporating evolution of transcription factor binding sites into annotated alignments Abha S Bais, Steffen Grossmann and Martin Vingron	841-850
Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability Vetriselvi Rangannan and Manju Bansal	851-862
Parsing regulatory DNA: General tasks, techniques, and the PhyloGibbs approach Rahul Siddharthan	863-870
Evolutionary insights from suffix array-based genome sequence analysis Anindya Poddar, Nagasuma Chandra, Madhavi Ganapathiraju, K Sekar, Judith Klein-Seetharaman, Raj Reddy and N Balakrishnan	871-881
A method for computing the inter-residue interaction potentials for reduced amino acid alphabet Abhinav Luthra, Anupam Nath Jha, G K Ananthasuresh and Saraswathi Vishveswara	883-889
Protein mechanics: a route from structure to function Richard Lavery and Sophie Sacquin-Mora	891–898
Protein local conformations arise from a mixture of Gaussian distributions Ashish V Tendulkar, Babatunde Ogunnaike and Pramod P Wangikar	899–908
Exploring conformational space using a mean field technique with MOLS sampling P Arun Prasad, V Kanagasabai, J Arunachalam and N Gautham	909–920
Analysis on sliding helices and strands in protein structural comparisons: A case study with protein kinases V S Gowri, K Anamika, S Gore and N Srinivasan	921–928
Use of secondary structural information and Cα-Cα distance restraints to model protein structures with MODELLER Boojala V B Reddy and Yiannis N Kaznessis	929–936
ARC: Automated Resource Classifier for agglomerative functional classification of prokaryotic proteins using annotation texts Muthiah Gnanamani, Naveen Kumar and Srinivasan Ramachandran	937–945
Synonymous codon usage in different protein secondary structural classes of human genes: Implication for increased non-randomness of GC₃ rich genes towards protein stability Pamela Mukhopadhyay, Surajit Basak and Tapash Chandra Ghosh	947–963
Cytoview: Development of a cell modelling framework M Sriram Iyengar, N Balakrishnan and Nagasuma Chandra	965–977
Sub classification and targeted characterization of prophage-encoded two-component cell lysis cassette K V Srividhya and S Krishnaswamy	979–990
The p53-MDM2 network: from oscillations to apoptosis Indrani Bose and Bhaswar Ghosh	991–997
Type 2 diabetes mellitus: phylogenetic motifs for predicting protein functional sites Ashok Sharma, Tanuja Rastogi, Meenakshi Bhartiya, A K Shasany and S P S Khanuja	999–1004
The next step in biology: A periodic table? Pawan K Dhar	1005–1008
Modularized study of human calcium signalling pathway Losiana Nayak and Rajat K De	1009–1017
Gene ordering in partitive clustering using microarray expressions Shubhra Sankar Ray, Sanghamitra Bandyopadhyay and Sankar K Pal	1019–1025
Analysis of breast cancer progression using principal component analysis and clustering G Alexe, G S Dalgin, S Ganesan, C DeLisi and G Bhanot	1027–1039

Indexed in CURRENT CONTENTS
                 CABS (Current Awareness in Biological Sciences)
                 Geo Abstracts
                 GEOBASE
                 EMBASE/Excerpta Medica
                 Index Medicus and MEDLINE